CAHNRS Webs

 

1)       Cakir, B., Tuncel, A., Hwang, S.K., Okita, T.W. Increase of grain yields by manipulating starch biosynthesis. In: Starch: Metabolism and Structure, (Nakamura, Y., ed.), Springer, Tokyo, Japan. In press.

2)        Tuncel, A., Cakir, B., Hwang, S.K., Okita, T.W. (2014) The role of the large subunit in redox regulation of the rice endosperm ADP-glucose pyrophosphorylase. FEBS J. 281, 4951-4962.

3)        Tuncel, A., Kawaguchi J., Ihara Y., Matsusaka H., Nishi A., Nakamura T., Kuhara S., Hirakawa H., Nakamura Y., Cakir B., Nagamine A., Okita T.W., Hwang S.K., Satoh H. (2014) The rice endosperm ADP-glucose pyrophosphorylase large subunit is essential for optimal catalysis and allosteric regulation of the heterotetrameric enzyme. Plant Cell Physiol. 55, 1169-1183.

 

1)        Boehlein, S.K., Shaw, J.R., McCarty, D.R., Hwang, S.K., Stewart, J.D., Hannah, L.C. (2013) The potato tuber, maize endosperm and a chimeric maize-potato ADP-glucose pyrophosphorylase exhibit fundamental differences in Pi inhibition. Arch. Biochem. Biophys. 537, 210-216.

2)        Wakuta, S., Shibata, Y., Yoshizaki, Y., Saburi, W., Hamada, S., Ito, H., Hwang, S.K., Okita, T.W., Matsui, H. (2013) Modulation of allosteric regulation by E38K and G101N mutations in the potato tuber ADP-glucose pyrophosphorylase.  Biosci. Biotechn. Bioch. 77, 1854-1859.

3)        Boehlein, S.K., Shaw, J., Hwang, S.K., Stewart, J., Hannah, L.C. (2013) Deciphering the kinetic mechanisms controlling selected plant ADP-glucose pyrophosphorylases. Arch. Biochem. Biophys. 535, 215-226.

 

1. Yurgel*, S.N., Y. Qu, J.T. Rice, J.N. Brown, M.S. Lipton, and M.L. Kahn. 2014. Metabolic specialization in a nitrogen-fixing symbiosis: proteome differences between Sinorhizobium medicae bacteria and bacteroids. MPMI. In revision.
2. Provorov, N., O. Onishchuk, S. Yurgel, O. Kurchak, E. Chizhevskaya, N. Vorobyov, T. Zatovaskaya, B. and Simarov. 2014. Engineering of highly-effective symbiotic bacteria for the sustainable crop production: evolutionary research provides a panel of genetic opportunities. Russ. J. Genetics. In press
3.  Yurgel*, S.N., J. Lynch, J. Rice, N. Adhikari, and S. Roje. 2014. Quantification of flavin production by bacteria. Bio-protocol. 4(15).
4. Yurgel*, S.N., N. Sa, J. Rice and S. Roje. 2014. Assay for GTP cyclohydrolase II activity in bacterial extracts. Bio-protocol. 4(15).
5.  Yurgel*, S.N., J. Rice, E. Domreis, J. Lynch, N. Sa, Z. Qamar, S. Rajamani, M. Gao, S. Roje, and W. D. Bauer. 2014. Sinorhizobium meliloti flavin secretion and bacteria-host interaction: Role of the bifunctional RibBA protein. MPMI. 27:437:445.

 

1. Yurgel*, S.N., J. Rice, and M.L. Kahn. 2013. Transcriptome analysis of the role of GlnD/GlnBK in nitrogen stress adaptation by Sinorhizobium meliloti Rm1021. PLoS ONE. 8.
2. Yurgel, S.N., M.W. Mortimer, J. Rice, J. Humann, and M.L. Kahn. 2013. Directed construction and analysis of a Sinorhizobium meliloti pSymA deletion mutant library. Appl Environ Microbiol. 79:2081-2087.
3. Yurgel*, S.N., J. Rice, M. Mudler, M.L. Kahn, V. Belova, and M. Roumiantseva. 2013 Truncated betB2-144 plays a critical role in Sinorhizobium meliloti Rm2011 osmoprotection and glycine-betaine catabolism. Eur J Soil Biol. 54:48-55.

Yurgel, S.N., Rice, J., Domreis, E., Lynch, J., Sa, N., Qamar, Z., Rajamani, S., Gao, M., Roje, S., and Bauer, W. 2014. Sinorhizobium meliloti flavin secretion and bacteria-host interaction: Role of the bifunctional RibBA protein. Mol. Plant Microbe Interact. 27:437-445.

 

 

1. Humann JL, Kahn ML^. 2014. Genes Involved in Desiccation Resistance of Rhizobia and Other Bacteria.  In Biological Nitrogen Fixation (de Bruijn, F.J., ed.), John Wiley & Sons, Inc., Hoboken, NJ.  http://dx.doi.org/10.1002/9781119053095.ch39

 

1. Yurgel, S.N., Mortimer, M.W., Rice, J.T., Humann, J.L. and Kahn, M.L. 2013. Directed Construction and Analysis of a Sinorhizobium meliloti pSymA Deletion Mutant Library. Appl. Environ. Microbiol. 79(6):2081-2087.
2. Yurgel, S.N., Rice, J., Mudler, M., Kahn, M.L., Belova, V. and Roumiantseva, M. 2013. Truncated betB2-144 plays a critical role in Sinorhizobium meliloti Rm2011 osmoprotection and glycine-betaine catabolism. Eur. J. Soil. Biol. 54:48-55
3. Yurgel, S.N., Rice, J., and Kahn, M.L. 2013 Transcriptome analysis of the role of GlnD/GlnBK in nitrogen stress adaptation by Sinorhizobium meliloti Rm1021. PLoS One 8(3):e58028.

 

1. Kim, S.-J., Vassão, D.G., Moinuddin, S.G.A., Bedgar, D.L., Davin, L.B., and Lewis, N.G.  2014. Allyl/propenyl phenol synthases from the creosote bush and engineering production of specialty/commodity chemicals, eugenol/isoeugenol, in Escherichia coli.  Arch. Biochem. Biophys. 541: 37-46. http://dx.doi.org/10.1016/j.abb.2013.10.019
2. Marques, J.V., Dalisay, D.S., Yang, H., Lee, C., Davin, L.B., and Lewis, N.G.  2014. A multi-omics strategy resolves the elusive nature of alkaloids in Podophyllum species. Mol. BioSyst. 10: 2838-2849. http://dx.doi.org/10.1039/c4mb00403e
3. Seneviratne, H.K., Dalisay, D.S., Kim, K.-W., Moinuddin, S.G.A., Yang, H., Davin, L.B., and Lewis, N.G.  2014. Non-host disease resistance response in pea (Pisum sativum) pods:  Biochemical function of DRR206 and phytoalexin pathway localization. Phytochemistry 113: 140-148. http://dx.doi.org/10.1016/j.phytochem.2014.10.013

1. Costa, M.A., Marques, J.V., Dalisay, D.S., Herman, B., Bedgar, D.L., Davin, L.B., and Lewis, N.G.  2013. Transgenic hybrid poplar for sustainable and scalable production of the commodity/specialty chemical, 2-phenylethanol. PloS One 8(12): e83169. http://dx.doi.org/10.1371/journal.pone.0083169
2. Cuthbertson, D.J., Johnson, S.R., Piljac-Žegarac, J., Kappel, J., Schäfer, S., Wüst, M., Ketchum, R.E.B., Croteau, R.B., Marques, J.V., Davin, L.B., Lewis, N.G., Rolf, M., Kutchan, T.M., Soejarto, D.D., and Lange, B.M.  2013. Accurate mass – time tag library for LC/MS-based metabolite profiling of medicinal plants. Phytochemistry 91: 187-197. http://dx.doi.org/10.1016/j.phytochem.2013.02.018
3. Lee, C., Bedgar, D.L., Davin, L.B., and Lewis, N.G.  2013. Assessment of a putative proton relay in Arabidopsis cinnamyl alcohol dehydrogenase catalysis. Org. Biomol. Chem. 11: 1127-1134. http://dx.doi.org/10.1039/C2OB27189C
4. Marques, J.V., Kim, K.-W., Lee, C., Costa, M.A., May, G.D., Crow, J.A., Davin, L.B., and Lewis, N.G.  2013. Next generation sequencing in predicting gene function in podophyllotoxin biosynthesis. J. Biol. Chem. 288: 466-479 (PMC3537044). http://dx.doi.org/10.1074/jbc.M112.400689

1.  Williams, D.E., Dalisay, D.S., Li, F., Amphlett, J., Maneerat, W., et al. Nahuoic acid A produced by a Streptomyces sp. isolated from a marine sediment is a selective SAM- competitive inhibitor of the histone methyltransferase SETD8. Organic Letters, 2012, 15, 414-417. DOI: 10.1021/ol303416k.

2.  Noro, J.C., Kalaitzis, J.A., Williams, D.E., Dalisay, D.S., Andersen, R.J., and Neilan, B.A. Tyrocidine a from a haliclona sponge derived Vibrio sp. Planta Medica, 2012, 78, 1161. DOI: 10.1055/s-0032-1320761.

3.  Williams, D.E., Dalisay, D.S., Patrick, B.O., Matainaho, T., Andrusiak, K., Deshpande, R., Myers, C.L., Piotrowski, J.S., Boone, C., Yoshida, M., Andersen, R. J. “Padanamides A and B, highly modified linear tetrapeptides produced in culture by a Streptomyces sp. isolated from a marine sediment.” Organic Letters, 2011, 13, 3936-9. DOI: 10.1021/ol2014494

4.  Dalisay, D.S., Saludes, J.P., Molinski, T.F. Ptilomycalin A inhibits laccase and melanization in Cryptococcus neoformans. Bioorganic and Medicinal Chemistry. 2011,19, 6654-6657. DOI: 10.1016/j.bmc.2011.05.041

5.  Pimenta, E. F., Vita-Marques, A. M., Tininis, A., Seleghim, M. H., Sette, L. D., Veloso, K., Ferreira, A. G., Williams, D. E., Patrick, B. O., Dalisay, D. S., Andersen, R. J., Berlinck, R. G. “Use of Experimental Design for the Optimization of the Production of New Secondary Metabolites by Two Penicillium Species.” Journal of Natural Products. 2010, 73, 11:1821- 32. DOI: 10.1021/np100470h

6.  Dalisay, D. S., Quach T, Molinski T. F. “Liposomal circular dichroism. Assignment of remote stereocenters in plakinic acids K and L from a Plakortis-Xestospongia sponge association”. Organic Letters, 2010, 12, 7:1524-7. DOI: 10.1021/ol100249v.

7.  Rogers, E. W., Dalisay, D. S., Molinski, T F. “Zwittermicin A: synthesis of analogs and
structure- activity studies.” Bioorganic and Medicinal Chemistry Letters, 2010, 20, 7:2183- 5. doi: 10.1016/j.bmcl.2010.02.032.

8.  Dalisay, D. S., Molinski, T. F. “Structure elucidation at the nanomole scale. 3. Phorbasides G from Phorbas sp.” Journal of Natural Products, 2010, 73, 4:679-82. DOI: 10.1021/np1000297

9.  Skepper, C. K., Dalisay, D. S., Molinski, T. F. “Synthesis and chain-dependent antifungal activity of long-chain 2H-azirine-carboxylate esters related to dysidazirine.” Bioorganic and Medicinal Chemistry Letters, 2010, 20, 6:2029-32. DOI: 10.1016/j.bmcl.2010.01.068.

10.  Makarieva, T. N., Zakharenko, A. M., Dmitrenok, P. S., Guzii, A. G., Denisenko, V. A., Savina, A. S., Dalisay, D. S., Molinski,T. F., Stonik, V. A. “Isorhizochalin: a minor unprecedented bipolar sphingolipid of stereodivergent biogenesis from the Rhizochalina incrustata.” Lipids, 2009, 44, 12:1155-62. DOI: 10.1007/s11745-009-3360-0.

11.  Smith, A. B. III, Liu Z, Hogan A. M., Dalisay, D. S., Molinski, T. F. ”Hemi-phorboxazole A: structure confirmation, analogue design and biological evaluation.” Organic Letters, 2009, 11, 16:3766-9. DOI: 10.1021/ol9014317.

12.  Dalisay, D. S., Morinaka, B. I., Skepper, C. K., Molinski, T. F. “A tetrachloro polyketide hexahydro-1H-isoindolone, muironolide A, from the marine sponge Phorbas sp. natural products at the nanomole scale.” Journal of the American Chemical Society, 2009, 131, 22:7552-3. DOI: 10.1021/ja9024929.

13.  Dalisay, D. S., Quach, T, Nicholas, G. N., Molinski, T. F. “Amplification of the Cotton effect of a single chromophore through liposomal ordering-stereochemical assignment of plakinic acids I and J.” Angewandte Chemie International Edition Engl. 2009, 48, 24:4367-71. DOI: 10.1002/anie.200900888.

14.  Mulder, R. J., Shafer, C. M., Dalisay, D. S., Molinski, T. F. “Synthesis and structure- activity relationships of bengazole A analogs.” Bioorganic and Medicinal Chemistry Letters, 2009, 19,11:2928-30. DOI: 10.1016/j.bmcl.2009.04.069.

15.  Dalisay, D. S., Molinski, T. F. Structure Elucidation at the Nanomole-Scale. 2. Hemiphorboxazole A from Phorbas sp. Organic Letters, 2009, 11, 1967-70. DOI: 10.1021/ol9004189.

16.  Dalisay, D. S., Molinski, T. F. NMR Quantitation of Natural Products at the Nano-mole Scale. Journal of Natural Products. 2009, 72, 739-44. DOI: 10.1021/np900009b

17.  Dalisay, D. S., Rogers, E. W., Edison, A. S., Molinski, T. F. Structure Elucidation at the Nanomole-Scale. 1. Trisoxazole macrolides and Thiazole-containing cyclic peptides from the Nudibranch Hexabranchus sanguineus. Journal of Natural Products, 2009, 72, 732-38. DOI: 10.1021/np8007649.

18.  Dalisay, D. S., Tsukamoto, S. Molinski, T. F. Absolute Configuration of the Bifunctionalized Sphingolipid Leucettamol A from Leucetta microrhaphis by Deconvoluted Exciton Coupled CD. Journal of Natural Products, 2009, 72, 353-359. DOI: 10.1021/np800549n.

19.  Molinski, T. F., Dalisay, D. S., Lievens, S. L., Saludes, J. P. Drug development from marine natural products. Nature Reviews Drug Discovery. 2009, 8, 69-85. DOI: 10.1038/nrd2487

20.  Skepper, C.K., Dalisay, D. S., Molinski, T. F. Synthesis and antifungal activity of (-)-(Z)-dysidazirine. Organic Letters. 2008, 10, 5269-71. doi: 10.1021/ol802065d.

21.  Molinski, T. F., Dalisay, D. S., Morinaka, B. I., Quach, T. Configuration of natural products: Liposomal circular dichroism (LCD) for acyclic stereocenters. Planta Medica, 2008, 74, 923-924. DOI: 10.1055/s-0028-1083949.

22.  Thomas, T., Evans, F. F., Schleheck, D., Mai-Prochnow, A., Burke, C., Penesyan, A., Dalisay, D. S., Stelzer-Braid, S., Saunders, N., Johnson, J., Ferriera, S., Kjelleberg, S., Egan, S. Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment. PLoS ONE, 2008, 3(9):e3252 DOI: 10.1371/journal.pone.0003252.

23.  Rogers, E. W., Dalisay, D. S., Molinski, T. F. (+)-Zwittermicin A: assignment of its complete configuration by total synthesis of the enantiomer and implication of D-serine in its biosynthesis. Angewandte Chemie International Edition Engl. 2008, 47, 8086-9. DOI: 10.1002/anie.200801561

24.  Dalisay, D. S, Webb, J. W., Scheffel, A., Svenson, C., James, S., Holmström, C., Egan, S. and S. Kjelleberg. A mannose-sensitive haemagglutinin (MSHA)-like pilus promotes attachment of Pseudoalteromonas tunicata cells to the surface of the green alga Ulva australis. Microbiology, 2006,152, 2875-2883. DOI:10.1099/mic.0.29158-0

25.  Mai-Prochnow, A., Evans, F., Dalisay, D.S., Stelzer, S., Egan, S., James, S., Webb, J. S. and S. Kjelleberg. Biofilm development and cell death in the inhibitory marine bacterium Pseudoalteromonas tunicata. Applied and Environmental Microbiology, 2004, 70, 3232-8. DOI: 10.1128/AEM.70.6.3232-3238.2004