CAHNRS Webs

1. Wei, Z., Sun, K., Sandoval, F.J., Cross, J.M., Gordon, C., Kang, C., and Roje, S. (2013) Folate polyglutamylation eliminates dependence of activity on enzyme concentration in mitochondrial serine hydroxymethyltransferases from Arabidopsis thaliana. Arch. Biochem. Biophys. 536:87-96.

2. Chen, L., Lee, J.H., Weber, H., Tohge, T., Witt, S., Roje, S., Fernie, A.R., and Hellmann, H. 2013. Arabidopsis BPM proteins function as substrate adaptors to a CULLIN3-based E3 ligase to affect fatty acid metabolism in plants. Plant Cell. 25:2253-2264.

3. Fernie, A.R., Bauwe, H., Eisenhut, M,. Florian, A., Hanson, D.T., Hagemann, M., Keech, O., Mielewczik, M., Nikoloski, Z., Peterhänsel, C., Roje, S., Sage, R., Timm, S., von Cammerer, S., Weber, A.P., and Westhoff, P. 2013. Perspectives on plant photorespiratory metabolism. Plant Biol. (Stuttg). 15:748-753.

4. Hasnain, G., Frelin, O., Roje, S., Ellens, K.W., Ali, K., Guan, J.C., Garrett, T.J., de Crécy-Lagard, V., Gregory, J.F. 3rd, McCarty, D.R., and Hanson, A.D. 2013. Identification and characterization of the missing pyrimidine reductase in the plant riboflavin biosynthesis pathway. Plant Physiol. 161:48-56.

5. Hung, C.Y., Fan, L., Kittur, F., Sun, K., Qiu, J., Tang, S., Hilliday, B.M., Xiao, B., Burkey, K.O., Bush, L.P., Conkling, M., Roje, S., and Xie, J. 2013. Alteration of the alkaloid profile in genetically modified tobacco reveals a role of methylenetetrahydrofolate reductase in nicotine N-demethylation. Plant Physiol. 161:1049-1060.

1. Balbuena, T.S., He, R., Salvato. F., Gang, D.R., Thelen, J.J. 2012. Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant Equisetum hyemale. Frontiers Plant Sci. 3:131.
2. Buchel, K., McDowell, E., Nelson, W., Descour, A., Gershenzon, J., Hilker, M., Soderlund, C., Gang, D.R., Fenning, T., Meiners. T. 2012. An elm EST database for identifying leaf beetle egg-induced defense genes. BMC Genomics 13:242.
3. Zhao, N., Ferrer, J.L., Moon, H.S., Kapteyn, J., Zhuang, X., Hasebe, M., Stewart, C.N. Jr., Gang D.R., Chen, F. 2012. A SABATH methyltransferase from the moss Physcomitrella patens catalyzes S-methylation of thiols and has a role in detoxification. Phytochemistry 81:31-41.
4. Berim, A., Hyatt, D.C., Gang, D.R. 2012. A set of regioselective O-methyltransferases gives rise to the complex pattern of methoxylated flavones in sweet basil. Plant Physiol. 160(2):1052-1069.
5. McDowell, E.T., Gang, D.R. 2012. A dynamic model for phytohormone control of rhizome growth and development. Recent Adv. Phytochem. 42:143-165
6. He, R., Kim, M.J., Nelson, W., Balbuena, T., Kim, R., Crow, J., May, G.A. Thelen, J.J., Soderlund, C.A., Gang, D.R. 2012. Next generation dequencing based transcriptomic and proteomic analysis of the connom reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity. Am. J. Bot. 99(2):232-247.
7. Koo, H.J., Gang, D.R. 2012. Suites of terpene synthases explain differential terpenoid production in ginger and turmeric tissues. PLoS One 7(12):e51481.
8. McDowell, E.T., Kapteyn, J., Schmidt, A., Li, C., Kang, J.H., Descour, A., Shi, F., Larson, M., Schilmiller, A., An, L., Jones, A.D., Pichersky, E., Soderlund, C.A., Gang, D.R. 2011. Comparative functional genomic analysis of Solanum glandular trochome types. Plant Physiol. 155:524-539.
9. Kapteyn, J., He, R., McDowell, E., Gang, D.R. 2010. Incorporation of nan-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples. BMC Genomics 11:413.
10. Schilmiller, A.L., Miner, D.P., Larson, M., McDowell, E., Gang D.R., Wilkerson, C., Last, R.L. 2010. Studies of a biochemical factory: Tomato trichome deep expressed sequence tag sequencing and proteomics. Plant Physiol. 153:1212-1223.
11. Xie, Z., Ma, X.-Q., Gang, D.R. 2009. Modules of co-regulated metabolites in turmeric (Curcuma longa) rhizome suggest the existence of biosynthetic modules in plant specialized metabolism. J. Exp. Bot. 60:87-97.
12. Marks, M.D., Tian, L., Wenger, J.P., Omburo, S,N., Soto-Fuentes, W., He, J., Gang, D.R., Weiblen, G.D., Dixon, R.A. 2009. Identification of candidate genes affecting delta (9)-tetrahydrocannabinol biosynthesis in Cannabis sativa. J. Exp. Bot. 60:3715-3726.
13. Ma, X.-Q, Gang, D.R. 2008. In vitro production of huperzine A, a promising drug candidate for Alzheimer’s Disease. Phytochemistry 69 (10):2022-2028.
14. Ma, X.-Q., Tan, C., Zhu, D.-Y., Gang, D.R., Xiao, P. 2007. Huperzine A from Huperzia species—An ethnopharmacolgical review. J. Ethnopharmacol. 113:15–34.
15. Kapteyn, J., Qualley, A. V., Xie, Z., Fridman, E., Dudareva, N., Gang, D.R. 2007. Evolution of cinnamate/p-coumarate carboxyl methyltransferases and their role in the biosynthesis of methylcinnamate. Plant Cell 19:3212–3229.
16.  Xie, Z., Kapteyn, J., Gang, D.R. 2007. A systems biology investigation of the MEP/terpenoid and shikimate/phenylpropanoid pathways points to multiple levels of metabolic control in sweet basil glandular trichomes. Plant J. 54:349-361.
17.  Jiang, H., Somogyi, A., Jacobsen, N.A., Timmermann, B.N., Gang, D.R. 2006. Analysis of curcuminoids by positive and negative electrospray ionization and tandem mass spectrometry. Rapid Commun. Mass Spectrom. 20(6):1001-1012
18.  Jiang, H., Timmermann, B.N., Gang, D.R. 2005. Use of LC-ESI-MS/MS toidentify diarylheptanoids in turmeric (Curcuma longa L.) rhizome. J. Chromatog. A. 1111:21-31.
19.  Jiang, H., Xie, Z., Koo, H., McLaughlin, S.P., Timmermann, B.N., Gang, D.R. 2006. Metabolic profiling, phylogenetic analysis and anti-inflammatory investigation of Zingiber species: Tools for authentication of ginger (Zingiber officinale Rosc.). Phytochemistry 67:232-244.
20. Vassão, D.G., Gang, D.R., Kueduka, T., Jackson, B., Pichersky, E., Davin, L.B., Lewis, N.G. 2006. Chavicol formation in sweet basil (Ocimum basilicum): Cleavage of an esterified C9 hydroxyl group with NAD(P)H-dependent reduction. Org. Biomol. Chem. 4:2733-2744.
21. Koeduka, T., Fridman, E., Gang, D.R., Vassão, D.G., Jackson, B.L., Kish, C.M., Orlova, I., Spassova, S.M., Lewis, N.G., Noel, J.P., Baiga, T.J., Dudareva, N., Pichersky, E. 2006. Eugenol and isoeugenol, major aromatic constituents of spices, are naturally synthesized via unexpected phenylpropanoid ester reduction. Proc. Nat. Acad. Sci. USA 103:10128-10133.
22. Deschamps, C., Gang, D.R., Dudareva, N., Simon, J.E. 2006. Developmental regulation of phenylpropanoid biosynthesis in leaves and glandular trichomes of basil (Ocimum basilicum L.). Int. J. Plant Science 167(3):447-454.
23. Ramirez-Ahumada, M.C., Timmermann, B.N., and Gang, D.R. 2006. Biosynthesis of curcuminoids and gingerols in turmeric (Curcuma longa) and ginger (Zingiber officinale): Identification of curcuminoid synthase and hydroxycinnamoyl-CoA thioesterases. Phytochemistry 67(15):1673-1685
24. Ma, X.-Q., Gang, D. R. 2006. Metabolic profiling of in vitro micropropagated and conventionally greenhouse grown ginger (Zingiber officinale). Phytochemistry 67(20):2239-2255.
25. Jiang, H., Somogyi, A., Timmermann, B.N., Gang, D.R. 2006. Instrument dependence of ESI ionization and MS/MS fragmentation of the gingerols. Rapid Commun. Mass Spectrom. 20(20):3089-3100.
26. Dixon, R.A., Gang, D.R., Charlton, A.J., Fiehn, O., Kuiper, H.A., Reynolds, T.L., Tjeerdema, R.S., Jeffery, E.H., German, J.B., Ridley, W.P., Seiber, J.N. 2006. Applications of metabolomics in agriculture. J. Agric. Food. Chem. 54:8984-8994.
27. Ma, X.-Q., Gang, D.R. 2006. Metabolic profiling of in vitro micropropagated and conventionally greenhouse grown turmeric (Curcuma longa). J. Agric. Food Chem. 54(25):9573-9583.
28. Jiang, H., Timmermann, B.N., Gang, D.R. 2006. Identification of diarylheptanoids in ginger (Zingiber officinale Rosc.) by LC-ESI-MS/MS. Rapid Commun. Mass Spectrom. 21(4):509-518.
29. Gang, D.R. 2005. Evolution of flavors and scents. Annu. Rev. Plant Biol. 56:301-325.
30. Ma, X.-Q., Tan, C., Zhu, D., Gang, D.R. 2005. Huperzine A content of Huperziaceae species in China. J. Agric. Food Chem. 53:1393-1398.
31. Fridman, E., Wang, J.H., Iijima, Y., Froehlich, J.E., Gang, D.R., Ohlrogge, J., Pichersky, E. 2005. Metabolic, genomic, and biochemical analyses of glandular trichomes from the wild tomato species Lycopersicon hirsutumidentify a key enzyme in the biosynthesis of methylketones. Plant Cell 17(4):1252-1267.
32. Jiang, H., Sólyom, A., Timmermann, B.N., Gang, D.R. 2005. Characterization of gingerol-related compounds in ginger rhizome (Zingiber officinale Rosc.) by high-performance liquid chromatography/electrospray ionization mass spectrometry. Rapid Commun. Mass Spectrom. 19(20):2957-2964.
33. Ma, X.-Q., Tan, C., Zhu, D., Gang, D.R. 2005. A survey of potential Huperzine A natural resources in China: The Huperziaceae. J. Ethnopharmacol. 104(1-2):54-67.
34. Iijima, Y., Gang, D.R., Lewinsohn, E., Pichersky, E. 2004. Characterization of geraniol synthase from the peltate glands of sweet basil (Ocimum basilicum). Plant Physiol. 134:370-379.
35. Boatright, J., Negre, F., Chen, X., Kish, C.M., Wood, B., Peel, G., Orlova, I., Gang, D.R., Rhodes, D., Dudareva, N. 2004. Understanding in vivobenzenoid metabolism in petunia petal tissue. Plant Physiol. 135:1993-2011.
36. Gang, D.R., Ramirez-Ahumada, M.C., Ma, X.-Q. 2004. Biochemical-genomics investigation of curcuminoid and gingerol biosynthesis in turmeric and ginger. In “Polyphenols Communications 2004: XXII International Conference on Polyphenols, Helskinki, Finland, August 25-28, 2004”, (Wahala, K., ed.), Secrétariat du Groupe Polyphénols, Université Victor Segalen, Bordeaux, France.
37. Ma, X.-Q., Gang, D.R. 2004. The Lycopodium alkaloids. Nat. Prod. Rep. 21:752-772
38. Iijima, Y., Davidovich-Rikanati, R., Fridman, E., Gang, D.R., Bar, E., Lewinsohn, E., Pichersky, E. 2004. The biochemical and molecular basis for the divergent patterns in the biosynthesis of terpenes and phenylpropenes in the peltate glands of three cultivars of basil (Ocimum basilicum). Plant Physiol. 136:3724-3736.
39. Gang, D.R. 2003. The potential for evolution of new secondary metabolites. In “The Encyclopedia of Plant & Crop Science”, (Goodman, R.M., ed.), Marcel Dekker, Inc., New York, NY.
40. Min, T., Kasahara, H., Bedgar, D.L., Youn, B., Lawrence, P.K., Gang, D.R., Halls, S.C., Park, H., Hilsenbeck, J.L., Davin, L.B., Lewis, N.G., Kang, C.H. 2003. Crystal structures of pinoresinol-lariciresinol and phenylcoumaran benzylic ether reductases and their relationship to isoflavone reductases. J. Biol. Chem. 278(50):50714-50723.
41. Gang, D.R., Lavid, N., Zubieta, C., Chen, F., Beuerle, T., Lewinsohn, E., Noel, J.P., Pichersky, E. 2002. Characterization phenylpropene O-methyltransferases from sweet basil: Facile change of substrate specificity and convergent evolution within a plant OMT family. Plant Cell 14(2):505-519.
42. Gang, D.R., Beuerle, T., Ullmann, P., Werck-Reichhart, D., Pichersky, E. 2002. Differential production of meta hydroxylated phenylpropanoids in sweet basil (Ocimum basilicum L.) peltate glandular trichomes and leaves is controlled by the activities of specific acyltransferases and hydroxylases. Plant Physiol. 130(3):1536–1544.
43. Gang, D.R., Simon, J., Lewinsohn, E., Pichersky, E. 2002. Peltate glandular trichomes of Ocimum basilicum L. (sweet basil) contain high levels of enzymes involved in the biosynthesis of phenylpropenes. J. Herbs Spices & Med. Plants 9(2/3):189-195.
44. Gang, D.R., Pichersky, E. 2002. The role of specific enzyme types in multiple routes to aromatic meta hydroxylation in the phenylpropanoid pathway.  In “Polyphenols Communications 2002; XXI International Conference on Polyphenols, Marrakech-Morocco, September 9-12, 2002”, (El Hadrami, I., ed.), Secrétariat du Groupe Polyphénols, Université Victor Segalen, Bordeaux, France, pp. 5–6.
45. Gang, D.R., Wang, J., Dudareva, N., Nam, K.H., Simon, J, Lewinsohn, E., Pichersky, E. 2001. An investigation of the storage and biosynthesis of phenylpropenes in sweet basil (Ocimum basilicum L.). Plant Physiol. 125(2):539-555.
46. Pichersky, E., Gang, D.R. 2000. Genetics and biochemistry of specialized metabolites in plants: An evolutionary perspective. Trends in Plant Sci. 5(10):439-445.
47. Gang, D.R., Kasahara, H., Xia, Z.-Q., Vander Mijnsbrugge, K., Bauw, G., Boerjan, W., Van Montagu, M., Davin, L.B., Lewis, N.G. 1999. Evolution of plant defense mechanisms: Relationships of phenylcoumaran benzylic ether reductases to pinoresinol-lariciresinol and isoflavone reductases. J. Biol. Chem. 274:7516-7527.
48. Gang, D.R., Costa, M.A., Fujita, M., Dinkova-Kostova, A.T., Wang, H.B., Burlat, V., Martin, W., Sarkanen, S., Davin, L.B.,  Lewis, N.G. 1999. Regiochemical control of monolignol radical coupling: A new paradigm for lignin and lignan biosynthesis. Chem. Biol. 6:143-151.
49. Fujita, M., Gang, D.R., Davin, L.B., Lewis, N.G. 1999. Recombinant pinoresinol-lariciresinol reductases from Western Red Cedar (Thuja plicata) catalyze opposite enantiospecific conversions during secoisolariciresinol formation: Gene cloning and heterologous expression. J. Biol. Chem. 274:618-627.
50. Gang, D.R., Fujita M., Davin, L.B., Lewis, N.G. 1998. Establishing the molecular basis of heartwood formation through the lignan biosynthetic pathway in Western Red Cedar, Western Hemlock and Loblolly Pine: The “abnormal lignins”. In “Lignin and Lignan Biosynthesis”, (Lewis, N.G., Sarkanen, S., eds.), ACS Symp. Ser. 697:389-421.
51. Gang, D.R., Dinkova-Kostova, A.T., Davin, L.B., Lewis, N.G. 1997. Phylogenetic links in plant defense systems: Lignans, isoflavonoids and their reductases. Comparison to isoflavonoid metabolism. In “Phytochemical Pest Control Agents”, (Hedin, P., ed.), ACS Symp. Ser. 658:58-89.
52. Gang, D.R., Weber, D.J. 1996. Using random amplified polymorphic DNA to analyze the genetic relationships and variability among three species of Wheat Smut (Tilletia). Bot. Bull. Acad. Sin. 37:173-180.
53. Dinkova-Kostova, A.D., Gang, D.R., Davin, L.B., Bedgar, D.L., Chu, A., Lewis, N.G. 1996. (+)-Pinoresinol/ (+)-lariciresinol reductase from Forsythia intermedia. Protein purification, cDNA cloning, heterologous expression and comparison to isoflavone reductase. J. Biol. Chem. 271:29473-29482.
54. Gang, D.R., Weber, D.J. 1995. A method for the preparation of genomic DNA for PCR and RAPD analysis from thick walled dormant teliospores of Tilletia species. BioTechniques 19:92-96.
55. Gang, D.R., Weber, D.J. 1995. Genetic variability and phenetic relationships determined among 10 populations of rubber rabbitbrush (Chrysothamnus Nauseosus Ssp. Hololeucus) by RAPD analysis of bulked genomic DNA samples. Bot. Bull. Acad. Sin. 36:1-8.
56. Weber, D.J., Gang, D.R., Halls, S.C., Smith, B.N., McArthur, E.D. 1994. Inheritance of hydrocarbons in subspecific big sagebrush (Artemisia tridentata) hybrids. Biochem. System. and Ecol. 22:689.
57. Halls, S.C., Gang, D.R., Weber, D.J. 1994. Seasonal variation in volatile secondary compounds of chrysothamnus nauseosus (Pallas) britt.; Asteraceae ssp. hololeucus (Gray) Hall. & Clem. Influences Herbivory. J. Chem. Ecology 20:2055-2063.
58. Weber, D.J., Gang, D.R., Halls, S.C., Nelson, D. 1994. Juniper decline in Natural Bridges National Monument and Canyonlands National Park. 8th Wildland Shrub Symposium on Revegatation. Las Vegas, Nevada, Intermountain Research Station Gen Tech Report INT-2, Nov. 1993.

1. Berim, A., Gang, D.R. 2013. The roles of a flavone 6-hydroxylase and 7-O-demethylation in the flavone biosynthesis network of sweet basil. J. Biol. Chem. 288(3):1795-1805.
2. Ishiuchi, K., Park, J.J., Long, R.M., Gang, D.R. 2013. Production of huperzine A and other Lycopodium alkaloids in Huperzia species grown under controlled conditions and in vitro. Phytochemistry 91:208-219.
3. Flores-Sanchez, I.J., Gang, D.R. 2013. Inhibition of hydroxycinnamoly- CoA thioesterases in ginger (Zingiber officinale Rosc.) and turmeric (Curcuma longa L.) by lipase inhibitors. Plant Physiol. Biochem. 72:46-53.
4. Koo, H.J., McDowell, E.T., Ma, X., Greer, K., Kapteyn, J., Xie, Z., Descour, A., Kim, H.R., Yu, Y., Kudrna, D., Wing, R.A., Soderlund, C.A., Gang, D.R. 2013. Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids. BMC Plant Biology 13:27.
5. Li, H., Bendiak, B., Siems, W.F., Gang, D.R., Hill, H.H. 2013. Ion mobility-mass correlation trend line separation of glycoprotein digests without deglycosylation. Int. J. Ion Mobil. Spectrom. 16(2):105-115.
6. Li, H., Bendiak, B., Siems, W.F., Gang, D.R., Hill, H.H. 2013. Carbohydrate structure characterization by tandem ion mobility mass spectrometry (IMMS)2. Anal. Chem. 85(5):2760-2769.
7. Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L.T., Zhang, Q., Kim, M.J., Schatz, M.C., Campbell, M., Li, J., Bowers, J., Tang, H., Lyons, E., Ferguson, A., Narzisi, G., Nelson, D.R., Blaby-Haas, C.E., Gschwend, A.R., Jiao, Y., Der, J.P., Zeng, F., Han, J., Min, X., Hudson, K.A., Singh, R., Grennan, A.K., Karpowicz, S.J., Watling, J.R., Ito, K., Robinson, S.A., Hudson, M.E., Yu, Q., Mockler, T.C., Carroll, A., Xheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C.M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M.J., Xiong, W., Walsh, J.A., Wu, J., Wang, M.L., Zhu, Y.J., Paull, R.E., Britt, A.B., Du, C., Downie, S.R., Schuler, M.A., Michael, T.P., Long, S.P., Ort, D.R., Schopf, J.W., Gang, D.R., Jiang, N., Yandell, M., dePamphilis, C.W., Merchant, S.S., Paterson, A.H., Buchanan, B.B., Li, S., Shen-Miller, J. 2013. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology 14:R41.
8. Berim, A., Gang, D.R. 2013. Characterization of two candidate flavone 8-O-methyltransferases suggests the existence of two potential routes to nevadensin in sweet basil. Phytochemistry 92:33-41.
9. Soderlund, C., Nelson, W., Willer, M., Gang, D.R. 2013. TCW: Transcriptome computational workbench. PLoS One 8(7):e69401.
10. Kim, M.J., Nelson, W., Soderlund, C.A., Gang, D.R. 2013. Next-generation sequencing-based transcriptional profiling of sacred lotus “China Antique”. Tropical Plant Biology 6(2-3)161-179.

 

1. Kim, M.J., Salvato, F., Balbuena, T.S., Gargouri, M., He., R., Nelson, W., Crow, J.A., Kramer, R., Kim, R., May, G.D., Thelen, J.J., Soderlund, C.S., Gang, D.R. 2014. Quantitative transcriptional and proteomic profiling of ginger rhizomes (Zingiber officinale Rosc.). Plant J.  In Revision.
2. Berim, A., Gang, D.R. 2014. New roles for ancient proteins: Flavone 8-hydroxylase in sweet basil trichomes is a rieske-type oxygenase. Plant. J. 80(3):385-395.
3. Ibdah, M., Martens, S., Herrera Valderrama, A.L., Dong, Y., Davidovich-Rikanati, R. Lewinsohn, E., Gang, D.R. 2014. A p-Coumaroyl-CoA double bond reductase involved in dihydrochalcone biosynthesis in apple (Malus x domestica Borkh.). Phytochemistry 107:24-31.
4. Kim, W., Park, C.-M., Park, J.-J., Akamatsu, H.O., Peever, T.L., Xian, M., Gang, D.R., Vandemark, G., Chen, W. 2014. Functional analyses of the diels-alderase gene sol5 of Ascochyta rabiei and Alternaria solani indicate that the solanapyrone phytotoxins are not required for pathogenicity. Mol. Plant Microbe In. 28(4):482-496.
5. Havelund, J.F., Salvato, F., Chen, M., Rao, R.S.P., Rogowska-Wrzesinska, A.,  Jensen, O.N., Gang, D.R., Thelen, J.J.,  Møller, I.M. 2014. Isolation of mitochondria from potato tubers. Bio-protocol 4(17):e1226.
6. Ibdah, M., Gang, D.R. 2014. The utility of coupled ion mobility spectrometry-time of flight mass spectrometry in the analysis of saturated and unsaturated phenylpropanoic acids and chalcones. Chemistry Central 8(1):38.
7. He, R., Gang, D.R. 2014. Somatic embryogenesis and Agrobacterium-mediated transformation of turmeric (Curcuma longa). Plant Cell Tiss. Org. (PCTOC) 116(3):333-342.
8. Yin, C., Park, J.-J., Gang, D.R., Hulbert, S. 2014. Characterization of a tryptophan 2-monooxygenase gene from Puccinia graminis f. sp. tritici involved in auxin biosynthesis and rust pathogenicity. Mol. Plant Microbe In. 27(2):227-235.
9. Salvato, F., Havelund, J.F., Chen, M., Rao, R.S.P., Rogowska-Wrzesinska, A., Jensen, O.N., Gang, D.R., Thelen, J.J.,  Møller, I.M. 2014. The potato tuber mitochondrial proteome. Plant Physiol. 164(2):637-653.
10. He, R., Salvato, F., Park, J.-J., Kim, M.J., Nelson, W., Balbuena, T.S., Willer, M., Crow, J.A., May, G.D., Soderlund, C.A., Thelen J.J., Gang, D.R. 2014. A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement. BMC Plant Biology 14(1):46.

1. Deeks M.J., Calcutt J.R., Ingle I.K.S., Hawkins T.J., Chapman S., Richardson A.C., Mentlak D.A., Dixon M.R., Cartwright F., Smertenko A.P., Oparka K. and Hussey P.J. (2012) A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Curr. Biol. 22, 1595-1600.
2. Smertenko A.P., Piette B. and Hussey P.J. (2011) The origin of phragmoplast asymmetry. Current Biology 21, 1924-1930.
3. Banora M.Y., Rodiuc N., Baldacci-Cresp F., Smertenko A., Bleve-Zacheo T., Mellilo M.T., Karimi M., Hilson P., Evrard J.-L., Favery B., Engler G., Abad P. and de Almeida-Engler J. (2011) Feeding cells induced by phytoparasitic nematodes require gamma-tubulin ring complex for microtubule reorganization. PLoS Pathog. 7 (12), e1002343.
4. Smertenko A. and Franklin-Tong V.E. (2011) Organisation and regulation of the cytoskeleton in plant programmed cell death. Cell Death Differ. 18, 1263-1270.
5. van Doorn W.G., Beers E.P., Dangl J.L., Franklin-Tong V.E., Gallois P., Hara-Nishimura I., Jones A.M., Kawai-Yamada M., Lam E., Mundy J., Mur L.A.J, Petersen M., Smertenko A., Taliansky M., van Breusegem F., Wolpert T., Woltering E., Zhivotovsky B. and Bozhkov P.V. (2011) Morphological classification of plant cell deaths. Cell Death Differen. 18, 1241-1246.
6. Bozhkov P.V., Smertenko A.P. and Zhivotovsky B. (2010) Aspasing out metacaspsases and caspases: Proteases of many trades. Sci. Signal. 3, pe48.
7. Deeks M.J., Fendrych M., Smertenko A., Bell K.S., Oparka K., Cvrckova F., Zarsky V. and Hussey P.J. (2010) The plant formin AtFH4 interacts with both actin and microtubules, and contains a newly identified microtubule-binding domain. J. Cell Sci. 123, 1209-1215.
8. Smertenko A.P., Deeks M.J. and Hussey P.J. (2010) Strategies of actin reorganisation in plant cells. J. Cell Sci. 123, 3019-3029.
9. Landrum M., Smertenko A., Edwards R., Hussey P.J. and Steel P.G. (2010) BODIPY probes to study peroxisome dynamics in vivo. Plant J. 62, 529-538.
10. Sundstrom J.F., Vaculova A., Smertenko A.P., Savenkov E.I., Golovko A., Minina E., Tiwari B.S., Rodriguez-Nieto S., Zamyatnin A.A., Valineva T., Saarikettu J., Frilander M.J., Suarez M.F., Zavialov A., Stahl U., Hussey P.J., Silvennoinen O., Sundberg E., Zhivotovsky B. and Bozhkov P.V. (2009) Tudor staphylococcal nuclease is an evolutionarily conserved component of the programmed cell death degradome. Nat. Cell Biol.11, 1347-1354.
11. Piette B.M.A.G., Liu J., Peeters K., Smertenko A., Hawkins T., Deeks M., Quinlan R., Zakrzewski W.J. and Hussey P.J. (2009) A thermodynamic model of microtubule assembly and disassembly. PLoS One 4, e6378.
12. Clement M., Ketelaar T., Rodiuc N., Banora M.Y., Smertenko A., Engler G., Abad P., Hussey P.J. and Engler J.D. (2009) Actin-depolymerizing factor2-mediated actin dynamics are essential for root-knot nematode infection of Arabidopsis. Plant Cell 21, 2963-2979.
13. Camacho L., Smertenko A.P., Perez-Gomez J., Hussey P.J. and Moore I. (2009) Arabidopsis Rab-E GTPases exhibit a novel interaction with a plasma-membrane phosphatidylinositol-4-phosphate 5-kinase. J. Cell Science 122, 4383-4392.
14. Guermonprez H., Smertenko A., Crosnier M.T., Durandet M., Vrielynck N., Guerche P., Hussey P.J., Satiat-Jeunemaitre B. and Bonhomme S. (2008) The POK/AtVPS52 protein localizes to several distinct post-Golgi compartments in sporophytic and gametophytic cells. J. Exp. Bot. 59, 3087-3098.
15. Smertenko A.P., Kaloriti D., Chang H.-Y., Fiserova J., Opatrny Z. and Hussey P.J. (2008) The C-terminal variable region specifies the dynamic properties of MAP65 isotypes. Plant Cell 20, 3346-3358.
16. Salpingidou G., Smertenko A., Hausmanowa-Petrucewicz I., Hussey P.J. and Hutchison C.J. (2007) A novel role for the nuclear membrane protein emerin in association of the centrosome to the outer nuclear membrane. J. Cell Biol. 178, 897-904.
17. Smertenko A.P., Chang H.Y., Sonobe S., Fenyk S.I., Weingartner M. Bogre L. and Hussey P.J. (2006) Control of the AtMAP65-1 interaction with microtubules through the cell cycle. J. Cell Sci. 119, 3227-3237.
18. Chang H.Y., Smertenko A.P., Igarashi H., Dixon D.P. and Hussey P.J. (2005) Dynamic interaction of NtMAP65-1a with microtubules in vivo. J. Cell Sci. 118, 3195-3201.
19. Bozhkov P.V., Suarez M.F., Filonova L.H., Daniel G., Zamyatnin A.A., Rodriguez-Nieto S., Zhivotovsky B. and Smertenko A. (2005) Cysteine protease mcII-Pa executes programmed cell death during plant embryogenesis. Proc. Nat. Acad. Sci. USA 102, 14463-14468.
20. Oh S.A., Johnson A., Smertenko A., Rahman D., Park S.K., Hussey P.J. and Twell D. (2005) A divergent cellular role for the FUSED kinase family in the plant-specific cytokinetic phragmoplast. Curr. Biol. 15, 2107-2111.
21. Bozhkov P.V., Filonova L.H., Suarez M.F., Helmersson A., Smertenko A.P., Zhivotovsky B. and von Arnold S. (2004) VEIDase is a principal caspase-like activity involved in plant programmed cell death and essential for embryonic pattern formation. Cell Death Differ. 11 (2), 175-182.
22. Suarez M.F., Filonova L.H., Smertenko A., Savenkov E.I., Clapham D.H., von Arnold S., Zhivotovsky B. and Bozhkov P.V. (2004) Metacaspase-dependent programmed cell death is essential for plant embryogenesis. Current Biology 14, R339-R340.
23. Smertenko A.P., Chang H.Y., Wagner V., Kaloriti D., Fenyk S., Sonobe S., Lloyd C., Hauser M.-T. and Hussey P.J. (2004) The Arabidopsis microtubule-associated protein AtMAP65-1: Molecular analysis of its microtubule bundling activity. Plant Cell 16, 2035-2047.
24. Müller S., Smertenko A., Wagner V., Heinrich M., Hussey P.J. and Hauser M.-T. (2004). The plant microtubule associated protein, AtMAP65-3/PLE, is essential for cytokinetic phragmoplast function. Curr. Biol. 14, 412-417.
25. Smertenko A.P., Bozhkov P.V., Filonova L.H., von Arnold S. and Hussey P.J. (2003) Re-organisation of the cytoskeleton during developmental programmed cell death in Picea abies embryos. Plant J. 33, 813-824.
26. Chan J., Mao G.J., Smertenko A., Hussey P.J., Naldrett M., Bottrill A., and Lloyd C.W. (2003) Identification of a MAP65 isoform involved in directional expansion of plant cells. FEBS Lett. 534, 161-163.
27. Twell D., Park S.K., Hawkins T.J., Schubert D., Schmidt R., Smertenko A. and Hussey P.J. (2002) MOR1/GEM1 has an essential role in the plant-specific cytokinetic phragmoplast. Nat. Cell Biol. 4 (9), 711-714.
28. Hussey P.J., Hawkins T.J., Igarashi H., Kaloriti D. and Smertenko A. (2002) The plant cytoskeleton: Recent advances in the study of the plant microtubule-associated proteins MAP-65, MAP-190 and the Xenopus MAP215-like protein, MOR1. Plant Mol. Biol. 50, 915-924.
29. Hussey P.J., Allwood E.G. and Smertenko A.P. (2002) Actin-binding proteins in the Arabidopsis genome database: Properties of functionally distinct plant actin-depolymerizing factors/cofilins. Philos. Trans. Royal Soc. B. 357 (1422), 791-798.
30. Allwood E.G., Anthony R.G., Smertenko A.P., Reichelt S., Drobak B.K., Doonan J.H., Weeds A.G. and Hussey P.J. (2002) Regulation of the pollen-specific actin-depolymerizing factor LIADF1. Plant Cell 14 (11), 2915-2927.
31. Smertenko A.P., Allwood E.G., Khan S., Jiang C.J., Maciver S.K., Weeds A.G. and Hussey P.J. (2001) Interaction of pollen-specific actin-depolymerizing factor with actin. Plant J. 25, 203-212.
32. Allwood E.G, Smertenko A.P. and Hussey P.J. (2001) Phosphorylation of plant actin-depolymerising factor by calmodulin-like domain protein kinase. FEBS Lett. 499, 97-100.
33. Yemets A.I., Kundelchuk O.P., Smertenko A.P., Solodushko V.G., Rudas V.A., Gleba Y.Y. and Blume Y.B. (2000) Transfer of amiprophosmethyl resistance from a Nicotiana plumbaginifolia mutant by somatic hybridisation. Theoretical Applied Genetics 100 (6), 847-857.
34. Smertenko A., Saleh N., Igarashi H., Mori H., Hauser-Hahn I., Jiang Ch.-J., Sonobe S., Lloyd C.W. and Hussey P.J. (2000) A new class of microtubule-associated proteins in plants. Nat. Cell Biol. 2, 750-753. (News release in the Nature Cell Biology).
35. Smertenko A.P., Jiang C.-J., Simmons N.J., Weeds A.G., Davies D.R. and Hussey P.J. (1998) Ser6 in the maize actin-depolymerizing factor, ZmADF3, is phosphorylated by a calcium-stimulated protein kinase and is essential for the control of functional activity. Plant J. 14, 187-194.
36. Blume Ya.B., Strashnyuk N.M., Smertenko A.P., Solodushko V.G., Sidorov V.A. and Gleba Yu.Yu. (1998) Alteration of β-tubulin in Nicotiana plumbaginifolia confers resistance to amiprophos-methyl. Theor. Appl. Genet. 97, 464-472.
37. Smertenko A.P., Lawrence S.L. and Hussey P.J. (1998) Immunological homologues of the Arabidopsis thaliana β1 tubulin are polyglutamylated in Nicotiana tabacum. Protoplasma 203, 138-143.
38. Smertenko A., Draber P., Viklicky V. and Opatrny Z. (1997) Heat stress affects the organisation of microtubules and cell division in Nicotiana tabacum L cells. Plant Cell Environ. 20 (12), 1534-1542. (Corresponding author).
39. Smertenko A., Blume Y., Viklicky V. and Draber P. (1997) Exposure of tubulin structural domains in Nicotiana tabacum microtubules probed by monoclonal antibodies. Eur. J. Cell Biol. 72, (2) 104-112.
40. Smertenko A., Blume Y., Viklicky V., Opatrny Z. and Draber P. (1997) Post-translational modifications and multiple tubulin isoforms in Nicotiana tabacum L cells. Planta 201 (3), 349-358.

1. Minina E.A., Filonova L.H., Fukada K., Savenkov E.I., Gogvadze V., Clapham D., Sanchez-Vera V., Suarez M.F., Zhivotovsky B., Daniel G., Smertenko A. and Bozhkov P.V. (2013) Autophagy and metacaspase determine the mode of cell death in plants. J. Cell Biol. 203, 917–927.

2. Kutik J., Kuthanova A., Smertenko A., Fischer L. and Opatrny Z. (2013) Cadmium-induced cell death in BY-2 cell culture starts with vacuolization of cytoplasm and terminates with necrosis. Physiol. Plant. 151, 423-433.

3. Moschou P.N., Smertenko A.P., Minina E.A., Fukada K., Savenkov E.I., Robert S., Hussey P.J. and Bozhkov P.V. (2013) The caspase-related protease Separase (EXTRA SPINDLE POLES) regulates cell polarity and cytokinesis in Arabidopsis. Plant Cell 25, 2171-2186.

 

1. Smertenko A. and Bozhkov P.V. (2014) Somatic embryogenesis: Life and death processes during apical-basal patterning. J. Exp. Bot. 65, 1343-1360.
2. Minina E.A., Smertenko A.P. and Bozhkov P.V. (2014) Vacuolar cell death in plants: Metacaspase releases the brakes on autophagy. Autophagy 10, 928-929.
3. Smertenko A. (2014) Determination of phosphorylation sites in microtubule associated protein MAP65-1. Methods Mol. Biol. 1171, 161-170.

 

 

Book chapters

Smertenko A. and Bozhkov P. (2014) The life and death signalling underlying cell fate determination during somatic embryogenesis. In “Applied Plant Cell Biology, Plant Cell Monographs” Vol. 22 (Nick P. and Opatrný Z. eds.), Springer-Verlag, Berlin, Heidelberg, pp.131-178.

 

 

1. Hampel, D., Mau, C.J.D. and Croteau, R.B. 2009. Taxol Biosynthesis: Identification and Characterization of Two Acetyl CoA: Taxoid-O-acetyl Transferases That Divert Pathway Flux Away From Taxol Production. Arch. Biochem. Biophys. 487:91-97.

2. Rios-Estepa, R., Turner, G.W., Lee, J.M., Croteau. R.B. and Lange B.M. 2008. A Systems Biology Approach Identifies the Biochemical Mechanisms Regulating Monoterpenoid Essential Oil Composition in Pepermint. Proc. Natl. Acad. Sci. USA 105:2818-2823.

3. Long R.M., Lagisetti, C., Coates, R.M. and Croteau, R.B. 2008. Specificity of the N-Benzoyl Transferase Responsible for the Last Step of Taxol Biosynthesis. Arch. Biochem. Biophys. 477:384-389.

4. Hyatt, D.C., Youn, B., Zhao, Y., Santhamma, B., Coates, R.M., Croteau, R. and Kang, C.-H. 2007. Structure of Limonene Synthase, a Simple Model for Terpenoid Cyclase Catalysis. Proc. Natl. Acad. Sci. USA 104:5360-5365.

5. Ketchum, R.E.B., Horiguchi, T., Qiu, D., Williams, R.M. and Croteau, R.B. 2007. Feeding Cultured Taxus Cells with Early Precursors Reveals Bifurcations in the Taxoid Biosynthetic Pathway. Phytochemistry 68:335-341.

6. Ketchum, R.E.B., Wherland, L. and Croteau, R.B. 2007. Stable Transformation and Long-Term Maintenance of Taxus Cell Suspension Cultures. Plant Cell Rep. 26:1025-1033.

7. Mau, C.J.D. and Croteau, R. 2006. Cytochrome P450 Oxygneases of Monoterpene Metabolism. Phytochem. Rev. 5:373-383.

8. Kaspera, R. and Croteau, R. 2006. Cytochrome P450 Oxygenases of Taxol Biosynthesis. Phytochem. Rev. 5:433-444.

9. Davis, E.M., Ringer, K.L. and Croteau, R. 2006. Biochemistry, Enzymology, and Biotechnological Potential of Monoterpene Biosynthesis in Mentha. Am. Chem. Soc. Symp. Ser. (in press).

10. Croteau, R., Ketchum, R.E.B., Long, R.M., Kaspera, R. and Wildung, M.R. 2006. Taxol Biosynthesis and Molecular Genetics. Phytochem. Rev. 5:75-97.

11. Ketchum, R.E.B. and Croteau, R.B. 2006. The Taxoid Metabolome and the Elucidation of the Paclitaxel Biosynthetic Pathway in Cell Suspension Cultures of Taxus. In “Biotechnology in Agriculture and Forestry”, Saito, K., Dixon, R. and Willmetzer, L. (eds.), Springer, Heidelberg, 57:291-309.

12. DeJong, J.M., Liu, Y., Bollon, A.P., Long, R.M., Jennewein, S., Williams, D. and Croteau, R.B. 2006. Genetic Engineering of Taxol Biosynthetic Genes in Saccharomyces cerevisiae. Biotechnol. Bioengin. 93:212-224.

13. Croteau, R., Davis, E.M., Ringer, K.L. and Wildung, M.R. 2005. Menthol Biosynthesis and Molecular Genetics. Naturwissenschaften 92:562-577.

14. Long, R.M. and Croteau, R. 2005. Preliminary Assessment of the C13-Side Chain 2´-Hydroxylase Involved in Taxol Biosynthesis. Biochem. Biophys. Res. Commun. 338:410-417.

15. Hyatt, D.C. and Croteau, R. 2005. Mutational Analysis of a Monoterpene Synthase Reaction: Altered Catalysis Through Directed Mutagenesis of (-)-Pinene Synthase from Abies grandis. Arch. Biochem. Biophys. 439:222-233.

16. Jin, Q., Williams, D.C., Hezari, M., Croteau, R. and Coates, R.M. 2005. Stereochemistry of the Macrocyclization and Elimination Steps in Taxadiene Biosynthesis Through Deuterium Labeling. J. Org. Chem. 70:4667-4675.

17. Wildung, M.R. and Croteau, R.B. 2005. Genetic Engineering of Peppermint for Improved Essential Oil Composition and Yield. Transgen. Res. 14:365-372.

18. Jin, Y., Williams, D.C., Croteau, R. and Coates, R.M. 2005. Taxadiene Synthase-Catalyzed Cyclization of 6-Fluorogeranylgeranyl Diphosphate to 7-Fluoroverticillenes. J. Am. Chem. Soc. 127:7834-7842.

19. Davis, E.M., Ringer, K.L., McConkey, M.E. and Croteau, R. 2005. Monoterpene Metabolism: Cloning, Expression and Characterization of Menthone Reductases from Peppermint. Plant Physiol. 137:873-881.

20. Ringer, K.L., Davis, E.M. and Croteau, R. 2005. Monoterpene Metabolism: Cloning, Expression and Characterization of (-)-Isopiperitenol/(-)-Carveol Dehydrogenase from Peppermint and Spearmint. Plant Physiol. 137:863-872.

1. Wager, A. and Browse, J. 2012 Social network: JAZ protein interactions expand our knowledge of jasmonate signaling. Front. Plant Sci. 3:41.

2. Foster, J., Kim, H.U., Nakata, P.A. and Browse, J. 2012 A Previously Unknown Oxalyl-CoA Synthetase Is Important for Oxalate Catabolism in Arabidopsis. Plant Cell 4:1217-1229.

3. Bates, P. and Browse, J. 2011 The Pathway of Triacylglycerol Synthesis through Phosphatidylcholine in Arabidopsis Produces a Bottleneck for the Accumulation of Unusual Fatty Acids in Transgenic Seeds. Plant J. 68:387-399.

4. Chen, H., Kim, H.U., Weng, H. and Browse, J. 2011 Malonyl-CoA Synthetase, Encoded by ACYL ACTIVATING ENZYME13, Is Essential for Growth and Development of Arabidopsis. Plant Cell. 23:2247-2262.

5. Sheard, L.B., Tan, X., Mao, H., Withers, J., Nissan, G.B., Hinds, T., Hsu, F.-F., Sharon, M., Browse, J., He, S.Y., Rizo-Rey, J., Howe, G. and Zheng, N. 2010 Mechanism of Jasmonate Recognition by an Inositol Phosphate-potentiated COI1-JAZ Co-receptor. Nature 468:400-405.

6. Wallis, J.G. and Browse, J. 2010 Lipid Biochemists Salute the Genome. Plant J. 61:1092-1106.

7. Browse, J. 2009 Jasmonate Passes Muster: A Receptor and Targets for the Defense Hormone. Annu. Rev. Plant Biol. 60:183-205.

8. Lu, C., Xin, Z., Ren, Z., Miquel, M. and Browse, J. 2009 An Enzyme Regulating Triacylglycerol Composition is Encoded by the ROD1 Gene of Arabidopsis. Proc. Natl. Acad. Sci. USA 106:18837-18842.

9. Thines, B., Katsir, L., Melotto, M., Niu, Y., Mandaokar, A., Liu, G., Nomura, K., He, S.Y., Howe, G.A. and Browse, J. 2007 JAZ Repressor Proteins are Targets of SCFCOI1 During Jasmonate Signaling. Nature 448:661-665.

10. Mandaokar, A., Thines, B., Shin, B., Lange, B.M., Choi, G., Koo, Y.J., Yoo, Y.J., Choi, Y.D., Choi, G. and Browse, J. 2006 Transcriptional Regulators of Stamen Development in Arabidopsis Identified by Transcriptional Profiling. Plant J. 46:984-1008.

11. Metz, J.G., Roessler, P., Facciotti, D., Levering, C., Dittrich, F., Lassner, M., Valentine, R., Lardizabal, K., Domergue, F., Yamada, A., Yazawa, K., Knauf, V. and Browse, J. 2001 Polyketide Synthases Produce Polyunsaturated Fatty in Both Prokaryotes and Eukaryotes. Science 293:290-293.

1. Wayne L.L., Wallis, J.G., Kumar R., Markham J.E. and Browse J. 2013 Cytochrome b5 Reductase Encoded by CBR1 is Essential for a Functional Male Gametophyte in Arabidopsis. Plant Cell. 25: 3052-3066.

2. Bhosale R., Jewell J.B., Hollunder J., Koo A.J., Vuylsteke M., Michoel T., Hilson P., Goossens A., Howe G.A., Browse J. and Maere S. 2013 Predicting Gene Function from Uncontrolled Expression Variation among Individual Wild-Type Arabidopsis Plants. Plant Cell. 25:2865-2877.

3. Fahy, D., Scheer B., Wallis J.G. and Browse J. 2013 Reducing saturated fatty acids in Arabidopsis seeds by expression of a Caenorhabditis elegans. 16:0-specific desaturase. Plant Biotechnol. J. 11:480-489.